Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PSHAa2852 | PSHAa2853 | PSHAa2852 | PSHAa2853 | Putative orphan protein; No homology to any previously reported sequences. | Homologs of previously reported genes of unknown function. | 0.658 |
| PSHAa2852 | greB | PSHAa2852 | PSHAa2851 | Putative orphan protein; No homology to any previously reported sequences. | Transcription elongation factor and transcript cleavage; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.519 |
| PSHAa2852 | yhgF | PSHAa2852 | PSHAa2854 | Putative orphan protein; No homology to any previously reported sequences. | Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein); Function of strongly homologous gene; factor. | 0.452 |
| PSHAa2853 | PSHAa2852 | PSHAa2853 | PSHAa2852 | Homologs of previously reported genes of unknown function. | Putative orphan protein; No homology to any previously reported sequences. | 0.658 |
| PSHAa2853 | greB | PSHAa2853 | PSHAa2851 | Homologs of previously reported genes of unknown function. | Transcription elongation factor and transcript cleavage; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.424 |
| PSHAa2853 | guaA | PSHAa2853 | PSHAa0649 | Homologs of previously reported genes of unknown function. | GMP synthetase (glutamine aminotransferase); Catalyzes the synthesis of GMP from XMP. | 0.454 |
| PSHAa2853 | hemDX | PSHAa2853 | PSHAa0099 | Homologs of previously reported genes of unknown function. | uroporphyrinogen-III synthase HemD (N terminal)/Uroporphyrin-III C-methyltransferase (C terminal); Function of strongly homologous gene; enzyme. | 0.447 |
| PSHAa2853 | yhgF | PSHAa2853 | PSHAa2854 | Homologs of previously reported genes of unknown function. | Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein); Function of strongly homologous gene; factor. | 0.525 |
| greB | PSHAa2852 | PSHAa2851 | PSHAa2852 | Transcription elongation factor and transcript cleavage; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Putative orphan protein; No homology to any previously reported sequences. | 0.519 |
| greB | PSHAa2853 | PSHAa2851 | PSHAa2853 | Transcription elongation factor and transcript cleavage; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Homologs of previously reported genes of unknown function. | 0.424 |
| greB | yhgF | PSHAa2851 | PSHAa2854 | Transcription elongation factor and transcript cleavage; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein); Function of strongly homologous gene; factor. | 0.687 |
| guaA | PSHAa2853 | PSHAa0649 | PSHAa2853 | GMP synthetase (glutamine aminotransferase); Catalyzes the synthesis of GMP from XMP. | Homologs of previously reported genes of unknown function. | 0.454 |
| guaA | hemDX | PSHAa0649 | PSHAa0099 | GMP synthetase (glutamine aminotransferase); Catalyzes the synthesis of GMP from XMP. | uroporphyrinogen-III synthase HemD (N terminal)/Uroporphyrin-III C-methyltransferase (C terminal); Function of strongly homologous gene; enzyme. | 0.456 |
| hemDX | PSHAa2853 | PSHAa0099 | PSHAa2853 | uroporphyrinogen-III synthase HemD (N terminal)/Uroporphyrin-III C-methyltransferase (C terminal); Function of strongly homologous gene; enzyme. | Homologs of previously reported genes of unknown function. | 0.447 |
| hemDX | guaA | PSHAa0099 | PSHAa0649 | uroporphyrinogen-III synthase HemD (N terminal)/Uroporphyrin-III C-methyltransferase (C terminal); Function of strongly homologous gene; enzyme. | GMP synthetase (glutamine aminotransferase); Catalyzes the synthesis of GMP from XMP. | 0.456 |
| yhgF | PSHAa2852 | PSHAa2854 | PSHAa2852 | Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein); Function of strongly homologous gene; factor. | Putative orphan protein; No homology to any previously reported sequences. | 0.452 |
| yhgF | PSHAa2853 | PSHAa2854 | PSHAa2853 | Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein); Function of strongly homologous gene; factor. | Homologs of previously reported genes of unknown function. | 0.525 |
| yhgF | greB | PSHAa2854 | PSHAa2851 | Conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein); Function of strongly homologous gene; factor. | Transcription elongation factor and transcript cleavage; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.687 |