STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2858Homologs of previously reported genes of unknown function. (225 aa)    
Predicted Functional Partners:
smf
Homologs of previously reported genes of unknown function.
 
 
 0.889
yifB
Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.838
PSHAa1662
Competence protein ComEC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.811
bioH
Putative enzyme in pimeloyl-CoA (biotin precursor) synthesis with alpha/beta-hydrolase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.805
radC
Associated with replication fork DNA repair protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the UPF0758 family.
 
    0.759
PSHAa2523
Homologs of previously reported genes of unknown function; Belongs to the UPF0102 family.
 
    0.668
tyrA
Bifunctional protein [Includes: chorismate mutase T (N-terminal); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.616
nagA
Putative N-acetylglucosamine-6-phosphate deacetylase; Function of strongly homologous gene; enzyme; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
  
    0.591
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.578
fliP
Flagellar biosynthesis; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.573
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.