Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PSHAa2858Homologs of previously reported genes of unknown function. (225 aa)    
Predicted Functional Partners:
smf
Homologs of previously reported genes of unknown function.
 
 
 0.908
yifB
Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.887
PSHAa1662
Competence protein ComEC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.848
bioH
Putative enzyme in pimeloyl-CoA (biotin precursor) synthesis with alpha/beta-hydrolase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
     
 0.777
PSHAa2523
Homologs of previously reported genes of unknown function; Belongs to the UPF0102 family.
 
    0.669
flgC
Flagellar biosynthesis; Function of strongly homologous gene; structural protein; Belongs to the flagella basal body rod proteins family.
   
   0.634
radC
Associated with replication fork DNA repair protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the UPF0758 family.
 
    0.634
tyrA
Bifunctional protein [Includes: chorismate mutase T (N-terminal); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.583
nagA
Putative N-acetylglucosamine-6-phosphate deacetylase; Function of strongly homologous gene; enzyme; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
  
    0.577
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.574
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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