Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2859Homologs of previously reported genes of unknown function. (854 aa)    
Predicted Functional Partners:
PSHAa0464
Homologs of previously reported genes of unknown function.
 
     0.775
nfuA
Conserved protein of unknown function; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
       0.756
PSHAa2861
Homologs of previously reported genes of unknown function; membrane component.
       0.749
PSHAa1568
Putative enzymatic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.705
PSHAa2494
Putative orphan protein; No homology to any previously reported sequences.
 
     0.677
PSHAa2185
Putative amidohydrolase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.672
PSHAa1062
Homologs of previously reported genes of unknown function.
  
     0.663
PSHAa0866
Putative orphan protein; No homology to any previously reported sequences.
  
     0.648
PSHAa2260
Conserved protein of unknown function with carboxypeptidase C domain; Homologs of previously reported genes of unknown function; enzyme.
  
 
   0.644
PSHAa1696
Leucine aminopeptidase-related protein; Function of strongly homologous gene; enzyme.
  
     0.605
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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