Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
norRTranscriptional regulator of anaerobic NO reduction and detoxification (EBP family); Function of homologous gene experimentally demonstrated in an other organism; regulator. (528 aa)    
Predicted Functional Partners:
rpoN
Sigma N (sigma 54) factor of RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.823
hmp
Nitric oxide dioxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the globin family.
     
 0.787
metR
Transcriptional activator MetR; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family.
      
 0.632
PSHAa2881
Putative integral inner membrane permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
     
 0.631
PSHAa0654
Homologs of previously reported genes of unknown function.
   
 
 0.577
PSHAa0317
Putative orphan protein; No homology to any previously reported sequences.
   
 
 0.567
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
   
 
 0.562
PSHAa2882
Putative orphan protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.528
PSHAa2621
Putative Sensory box sensor histidine kinase/response regulator; Function of strongly homologous gene; receptor.
   
 
 0.507
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
   
 
 0.475
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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