STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2889Putative secreted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy. (197 aa)    
Predicted Functional Partners:
PSHAa2180
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.671
PSHAa1171
Homologs of previously reported genes of unknown function.
  
     0.659
PSHAa2947
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.658
PSHAa0866
Putative orphan protein; No homology to any previously reported sequences.
  
     0.629
PSHAa1568
Putative enzymatic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.605
PSHAa0470
Homologs of previously reported genes of unknown function.
  
     0.593
leuD
3-isopropylmalate isomerase, subunit with LeuC; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.586
leuC
3-isopropylmalate isomerase, subunit with LeuD; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.586
PSHAb0340
Putative Outer membrane protein with a TonB box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.576
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.
       0.549
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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