Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2934Homologs of previously reported genes of unknown function. (621 aa)    
Predicted Functional Partners:
PSHAa0134
Homologs of previously reported genes of unknown function.
 
  
 0.849
CheB
Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.821
PSHAa1380
Homologs of previously reported genes of unknown function.
 
  
 0.818
PSHAa0456
Putative HAMP domain/GGDEF domain/EAL domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
    0.809
PSHAa2925
Homologs of previously reported genes of unknown function.
 
     0.807
PSHAa2736
Homologs of previously reported genes of unknown function.
 
 
 0.792
PSHAb0191
Homologs of previously reported genes of unknown function; membrane component.
  
   
 0.789
PSHAa2294
Putative orphan protein; No homology to any previously reported sequences; membrane component.
 
    0.782
PSHAa2203
Homologs of previously reported genes of unknown function.
  
 0.780
tatC
Twin-arginine translocase subunit, sec-independent protein export; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
       0.773
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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