STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdhAPutative 3-hydroxybutyrate dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)    
Predicted Functional Partners:
PSHAa2942
Putative succinyl-CoA transferase, beta subunit; Function of strongly homologous gene; enzyme.
 
 0.986
PSHAa2943
Putative succinyl-CoA transferase, alpha subunit; Function of strongly homologous gene; enzyme.
 
 0.982
PSHAa1447
succinyl-CoA transferase, subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.926
atoA
succinyl-CoA transferase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.921
PSHAa0909
Putative 3-oxoacyl-[acyl-carrier protein] reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
0.915
hmgcL
Hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.915
metX
Putative homoserine O-acetyltransferase (EC 2.3. 1.31); Function of strongly homologous gene; enzyme; Belongs to the AB hydrolase superfamily. MetX family.
       0.879
PSHAa2946
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
 0.869
hdhA
7-alpha-hydroxysteroid dehydrogenase (7-alpha-HSDH); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.746
PSHAb0409
Putative 3-oxoacyl-[acyl-carrier-protein] reductase (fabG-like); Function of strongly homologous gene; enzyme.
 
    
0.641
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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