Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa2946Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (433 aa)    
Predicted Functional Partners:
bdhA
Putative 3-hydroxybutyrate dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.868
PSHAa2943
Putative succinyl-CoA transferase, alpha subunit; Function of strongly homologous gene; enzyme.
 
    0.850
PSHAa2942
Putative succinyl-CoA transferase, beta subunit; Function of strongly homologous gene; enzyme.
 
    0.834
metX
Putative homoserine O-acetyltransferase (EC 2.3. 1.31); Function of strongly homologous gene; enzyme; Belongs to the AB hydrolase superfamily. MetX family.
 
     0.829
PSHAa2941
Putative transcriptional regulator sensing dicarboxylates; Function of strongly homologous gene; regulator.
       0.542
PSHAa2947
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
     0.539
atoE
Putative short-chain fatty acid transport protein (scFAT family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
   
 0.490
PSHAa1776
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
  
 0.406
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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