STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2947Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor. (763 aa)    
Predicted Functional Partners:
PSHAb0340
Putative Outer membrane protein with a TonB box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
    0.758
PSHAb0341
Putative outer membrane protein with a TonB box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
    0.720
TonB2
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.699
PSHAa0428
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
  
 0.674
PSHAb0524
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.672
PSHAb0158
Putative TonB-dependent receptor with TonB-box; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
   
 0.664
PSHAa2889
Putative secreted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.658
PSHAa1415
Homologs of previously reported genes of unknown function; membrane component.
  
   
 0.657
PSHAa1840
Putative TonB-dependent receptor; Function of strongly homologous gene; receptor.
  
  
 0.655
PSHAa0840
Homologs of previously reported genes of unknown function; regulator.
  
  
 0.653
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.