Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa2962Homologs of previously reported genes of unknown function. (391 aa)    
Predicted Functional Partners:
PSHAa2961
Homologs of previously reported genes of unknown function.
 
     0.795
PSHAa2436
Homologs of previously reported genes of unknown function.
  
     0.546
polA
Multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.544
PSHAa0125
Homologs of previously reported genes of unknown function.
  
     0.513
PSHAb0414
Putative membrane associated hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.513
PSHAa0695
Putative outer membrane receptor for ferric iron uptake; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.476
PSHAb0527
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.474
PSHAa0470
Homologs of previously reported genes of unknown function.
  
     0.470
PSHAa2407
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.461
PSHAa1192
Putative TPR domain protein (tetratricopeptide repeat); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 9482716, 1882418.
 
     0.460
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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