Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2963Homologs of previously reported genes of unknown function; 10940016. (943 aa)    
Predicted Functional Partners:
PSHAa1561
Putative orphan protein; No homology to any previously reported sequences.
  
     0.761
PSHAa0643
Homologs of previously reported genes of unknown function; enzyme.
  
    0.686
PSHAb0512
Putative Ton-B dependent protein (could be involved in iron transport); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.603
PSHAa1560
Homologs of previously reported genes of unknown function.
  
     0.581
PSHAa2399
Putative nudix hydrolase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the Nudix hydrolase family.
  
     0.569
PSHAa2964
Homologs of previously reported genes of unknown function.
       0.509
PSHAa2965
Putative unknown membrane associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.509
PSHAa2966
Homologs of previously reported genes of unknown function; Belongs to the glucose-6-phosphate 1-epimerase family.
       0.466
PSHAa0676
Putative transposase (IS492); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.453
PSHAa1862
Putative TonB-dependent receptor; Function of homologous gene experimentally demonstrated in an other organism; receptor.
  
     0.453
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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