Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2970Homologs of previously reported genes of unknown function. (210 aa)    
Predicted Functional Partners:
PSHAa2972
Homologs of previously reported genes of unknown function.
 
   
 0.963
PSHAa2971
Conserved protein of unknown function, possibly secreted; Homologs of previously reported genes of unknown function.
 
   
 0.959
PSHAa2457
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
     0.626
PSHAa1142
Homologs of previously reported genes of unknown function.
  
     0.571
PSHAa1353
Homologs of previously reported genes of unknown function.
  
     0.536
PSHAa1352
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
   
 0.532
PSHAa2969
Putative orphan protein; No homology to any previously reported sequences.
       0.501
PSHAa1625
Putative ABC-type Na+ efflux pump, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.495
PSHAb0165
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.482
PSHAa2490
Homologs of previously reported genes of unknown function.
  
     0.457
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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