STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2985Homologs of previously reported genes of unknown function. (202 aa)    
Predicted Functional Partners:
PSHAa2988
Homologs of previously reported genes of unknown function.
  
 
 0.837
PSHAa2984
Homologs of previously reported genes of unknown function.
       0.790
PSHAa2986
Putative ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.787
PSHAa2987
Putative orphan protein; No homology to any previously reported sequences.
       0.773
PSHAa2989
Homologs of previously reported genes of unknown function.
       0.773
trxA
Thioredoxin 1, redox factor; Function experimentally demonstrated in the studied organism; enzyme; Belongs to the thioredoxin family.
    
   0.561
PSHAa2342
Putative thioredoxin-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
    
   0.561
PSHAa1197
Homologs of previously reported genes of unknown function.
   
    0.550
PSHAa1198
Homologs of previously reported genes of unknown function.
   
    0.550
rhlE-2
DEAD-box protein family; Function of strongly homologous gene; factor; Belongs to the DEAD box helicase family.
  
    0.468
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.