Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
parBParB family protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the ParB family. (308 aa)    
Predicted Functional Partners:
parA
Transcriptional regulator of chromosome partitioning protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.997
PSHAa0816
Putative ParA family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
 0.950
PSHAa1599
Putative Soj protein, ATPases involved in chromosome partitioning; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
 
 0.928
gidB
Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.928
PSHAb0001
Putative ATPase involved in chromosome partitioning (parA family protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
 
 0.920
mnmG
tRNA modification, oxidoreductase-like with FAD/NAD(P)-binding domain; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
  
 0.868
PSHAa1716
Putative cell division protein with DNA segregation ATPase FtsK/SpoIIIE domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
   
 0.785
dnaA
DNA replication initiator protein, transcriptional regulator of replication and other genes; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.756
dnaN
DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
  
 0.650
PSHAa2161
Homologs of previously reported genes of unknown function.
  
 
 0.632
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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