Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAb0331Homologs of previously reported genes of unknown function. (227 aa)    
Predicted Functional Partners:
sigW
Putative RNA polymerase sigma factor (ECF family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.970
PSHAb0330
Homologs of previously reported genes of unknown function.
 
     0.878
PSHAb0329
Putative unknown lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
     0.672
PSHAb0327
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
     0.622
sigY
Putative RNA polymerase sigma factor, ECF subfamily, response to stress; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.561
PSHAa0584
Homologs of previously reported genes of unknown function; transporter.
  
     0.463
PSHAb0328
Putative orphan protein; No homology to any previously reported sequences.
       0.448
PSHAb0333
Putative protein phosphatase with Diacylglycerol kinase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
     0.441
PSHAa1621
Putative TonB-dependent receptor protein with OmpA-like transmembrane domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; leader peptide; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.428
PSHAa1990
DNA polymerase II; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.418
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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