STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI76393.1EmrB/QacA family drug resistance transporter; Belongs to the major facilitator superfamily. (519 aa)    
Predicted Functional Partners:
CVI76394.1
Secretion protein HlyD family protein.
 
 0.974
CVI83406.1
Multidrug resistance protein A.
 
 0.905
CVI76946.1
HlyD family secretion protein.
 
 0.879
CVI82439.1
Secretion protein HlyD family protein.
 
 0.879
CVI76395.1
RND efflux system outer membrane lipoprotein.
 
  0.766
CVI85969.1
Secretion protein HlyD family protein.
 
     0.728
CVI76396.1
Transcriptional regulatory protein.
 
     0.623
CVI85233.1
RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.544
CVI82435.1
Pyochelin synthetase.
  
 
 0.531
CVI85766.1
Multidrug resistance protein MdtN.
  
  0.496
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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