STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI76937.1Nodulation competitiveness protein nfeD. (457 aa)    
Predicted Functional Partners:
CVI76940.1
SPFH domain-containing protein/band 7 family protein.
 
  
 0.970
CVI83204.1
NfeD family protein.
  
  
 0.664
CVI83201.1
SPFH domain-containing protein/band 7 family protein.
 
  
 0.597
CVI76935.1
Hypothetical protein.
       0.551
CVI76484.1
HflC protein; HflC and HflK could regulate a protease.
 
  
 0.495
CVI76933.1
Hypothetical protein.
 
     0.469
CVI76483.1
ftsH protease activity modulator HflK; HflC and HflK could encode or regulate a protease.
 
  
 0.421
CVI85265.1
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
  
     0.407
CVI84674.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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