STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI77425.1Filamentous hemagglutinin outer membrane protein. (776 aa)    
Predicted Functional Partners:
CVI77423.1
Hemolysin activation/secretion protein-like protein.
 
 0.965
CVI77421.1
FecR protein.
       0.740
CVI78900.1
Surface antigen (D15).
 
 0.729
CVI77419.1
Sulfate transporter membrane protein.
  
    0.695
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.686
CVI77416.1
Periplasmic sensor signal transduction histidine kinase.
  
    0.684
CVI82435.1
Pyochelin synthetase.
   
 
 0.486
CVI77428.1
Histidine utilization repressor.
       0.455
CVI76160.1
Lipolytic protein.
   
 0.448
CVI81252.1
Arylesterase.
   
 0.448
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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