STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI77560.1Serine/threonine protein kinase. (323 aa)    
Predicted Functional Partners:
stp_1
Serine/threonine phosphatase stp.
 0.959
CVI77561.1
FHA domain protein.
 
 
 
 0.937
stp_2
Serine/threonine phosphatase stp.
 
 0.930
pstP
PP2C-family Ser/Thr phosphatase.
 
 0.930
CVI86357.1
Multi-sensor hybrid histidine kinase.
   
 0.856
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.855
CVI85773.1
Multi-sensor hybrid histidine kinase.
  
 0.844
CVI85906.1
Multi-sensor hybrid histidine kinase.
  
 0.844
CVI77553.1
Serine/threonine protein kinase.
 
0.838
CVI86413.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.784
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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