STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI77811.1Short chain dehydrogenase/reductase family oxidoreductase. (259 aa)    
Predicted Functional Partners:
CVI82435.1
Pyochelin synthetase.
  
 0.958
CVI82432.1
Beta-ketoacyl synthase.
  
 0.922
CVI85077.1
Non-ribosomal peptide synthetase.
  
 0.852
CVI77810.1
Hypothetical protein.
 
    0.829
CVI77812.1
acyl-CoA dehydrogenase.
  
  0.823
CVI77809.1
Stress responsive A/B Barrel Domain protein.
 
     0.809
CVI86305.1
Oxidoreductase FAD/NAD(P)-binding subunit; Belongs to the cytochrome P450 family.
  
 0.772
CVI80714.1
Short-chain dehydrogenase/reductase SDR.
  
     0.764
CVI81633.1
Glutamate synthase.
     
 0.750
CVI77807.1
Oxidoreductase.
 
 
  0.718
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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