STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI77828.1Extracellular ligand-binding receptor. (384 aa)    
Predicted Functional Partners:
CVI77831.1
ABC transporter-like protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.987
CVI77830.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.977
CVI78293.1
Branched-chain amino acid ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.958
CVI80282.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.944
CVI77829.1
Extracellular ligand-binding receptor.
 
  
 
0.895
CVI77826.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.891
CVI77827.1
Branched-chain amino acid ABC transporter integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.891
CVI80727.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.815
CVI77832.1
ABC transporter-like protein.
 
 
  0.813
CVI74557.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.787
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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