Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CVI79200.1Isochorismatase. (193 aa)    
Predicted Functional Partners:
CVI82432.1
Beta-ketoacyl synthase.
  
 0.771
CVI85894.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
  0.765
CVI83886.1
4-hydroxyphenylacetate 3-monooxygenase reductase subunit.
  
 
 0.762
CVI82435.1
Pyochelin synthetase.
  
 
 0.735
CVI79198.1
Methionine sulfoxide reductase B.
       0.697
CVI84773.1
Amidase.
    
  0.693
CVI84774.1
Urea amidolyase.
     
  0.686
gpsA
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.644
CVI85515.1
Asp/Glu racemase.
  
 
 0.621
CVI79194.1
ABC transporter.
       0.620
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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