STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI79309.1Aldose 1-epimerase. (300 aa)    
Predicted Functional Partners:
CVI75150.1
Phosphotransferase system, IIBC component.
     
 0.739
CVI85801.1
PTS system N-acetylglucosamine-specific transporter subunit IIBC.
     
 0.739
glk
Bifunctional glucokinase/RpiR family transcriptional regulator; Belongs to the bacterial glucokinase family.
    
 0.720
treA
Trehalase; Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system.
  
  
  0.690
CVI83191.1
Lipoprotein.
  
  
  0.665
CVI75152.1
Multiphosphoryl transfer protein.
  
 
 0.637
CVI85802.1
Multiphosphoryl transfer protein.
  
 
 0.637
CVI85634.1
General secretion pathway protein K.
  
   
 0.606
CVI80052.1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.601
tal
Transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
   
 0.601
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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