STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI81422.1Methyltransferase type 11. (270 aa)    
Predicted Functional Partners:
CVI82435.1
Pyochelin synthetase.
    
 0.906
CVI85077.1
Non-ribosomal peptide synthetase.
   
 0.870
CVI82432.1
Beta-ketoacyl synthase.
   
 0.862
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.772
CVI86291.1
Phospholipase D/transphosphatidylase.
 
 
  0.729
CVI85894.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
     
 0.694
CVI79697.1
Dihydrolipoamide dehydrogenase.
     
 0.668
CVI85075.1
Non-ribosomal peptide synthetase.
    
 0.663
CVI79075.1
Peptide synthetase-like protein.
    
 0.640
CVI81420.1
Phasin.
       0.610
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.