STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI83138.1HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (423 aa)    
Predicted Functional Partners:
CVI83136.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein.
 0.987
CVI83134.1
RND efflux system outer membrane lipoprotein.
 
 0.968
CVI75999.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein.
  0.922
CVI86512.1
Hydrophobe/amphiphile efflux-1 (HAE1) family protein.
  0.921
CVI82443.1
Multidrug efflux system lipoprotein.
  
 0.866
CVI85968.1
RND efflux system outer membrane lipoprotein.
  
 0.856
CVI76949.1
RND efflux system outer membrane lipoprotein.
  
  0.853
CVI76001.1
Multidrug efflux system lipoprotein.
  
 0.851
CVI77442.1
RND efflux system outer membrane lipoprotein.
 
 0.848
CVI80918.1
RND efflux system outer membrane lipoprotein.
  
  0.844
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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