STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI83263.1Multidrug DMT transporter permease. (332 aa)    
Predicted Functional Partners:
CVI83555.1
Integrase; Belongs to the 'phage' integrase family.
  
     0.679
CVI76406.1
PF07608 family protein.
  
     0.639
CVI76095.1
Type IV pilus assembly protein PilZ.
  
     0.582
CVI76492.1
Hypothetical protein.
  
     0.514
CVI82290.1
Membrane protein.
  
     0.514
CVI74247.1
Hypothetical protein.
  
     0.498
CVI84643.1
Hypothetical protein.
  
     0.493
CVI81984.1
DMSO reductase anchor subunit (DmsC).
  
     0.489
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.483
CVI82722.1
Glutathione S-transferase-like protein.
  
  
  0.475
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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