STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI83698.1Short chain dehydrogenase/reductase family oxidoreductase. (256 aa)    
Predicted Functional Partners:
CVI82432.1
Beta-ketoacyl synthase.
  
 0.926
CVI82435.1
Pyochelin synthetase.
  
 0.923
CVI85077.1
Non-ribosomal peptide synthetase.
  
 
 0.861
CVI81633.1
Glutamate synthase.
    
  0.704
CVI85075.1
Non-ribosomal peptide synthetase.
    
 0.672
CVI85503.1
acetoacetyl-CoA synthetase.
     
 0.667
CVI81158.1
Short chain dehydrogenase.
  
 
  0.635
CVI79075.1
Peptide synthetase-like protein.
    
 0.618
CVI81288.1
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.589
CVI80676.1
3-ketoacyl-ACP reductase.
  
 
  0.579
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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