STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI83741.1ABC transporter. (526 aa)    
Predicted Functional Partners:
CVI83743.1
ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
  0.994
CVI83745.1
Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
  0.992
CVI83739.1
Sugar ABC transporter substrate-binding protein.
 
  0.979
CVI75796.1
Inner membrane ABC transporter permease YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
  0.965
CVI75798.1
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
  0.946
CVI75802.1
Periplasmic binding protein/LacI transcriptional regulator.
 
  0.912
CVI78417.1
Ribose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
  
  0.902
CVI81558.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  0.902
CVI77820.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  0.900
CVI85300.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  0.891
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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