STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI83921.1Hypothetical protein. (3385 aa)    
Predicted Functional Partners:
CVI77784.1
Catalase.
  
  
  0.898
CVI74538.1
Hypothetical protein.
  
  
  0.889
CVI84869.1
Fis family transcriptional regulator.
  
     0.770
CVI85493.1
Hypothetical protein.
  
     0.764
CVI85502.1
Pectate lyase superfamily protein.
  
     0.764
CVI85718.1
Hypothetical protein.
  
     0.764
CVI77520.1
Methyltransferase domain protein.
  
     0.762
CVI85692.1
Outer membrane biogenesis protein BamB.
  
     0.762
CVI82088.1
Outer membrane biogenesis protein BamB.
  
     0.761
CVI82561.1
Fusaric acid resistance protein family protein.
  
    0.757
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.