STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI84178.1HNS-like transcriptional regulator. (98 aa)    
Predicted Functional Partners:
CVI80445.1
Barstar family protein.
  
     0.764
CVI76449.1
Glycosyltransferase.
  
     0.730
CVI84645.1
Acetyltransferase.
  
     0.712
CVI74268.1
Transglycosylase SLT domain-containing protein.
  
     0.706
CVI75320.1
Hypothetical protein.
  
     0.706
CVI82809.1
Membrane protein.
  
     0.703
CVI79569.1
Membrane protein.
  
     0.699
CVI78010.1
Thioredoxin domain-containing protein.
  
     0.693
CVI82789.1
Lipoprotein.
  
     0.693
CVI82891.1
Hypothetical protein.
  
     0.684
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.