STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI84303.1EmrB/QacA family drug resistance transporter; Belongs to the major facilitator superfamily. (501 aa)    
Predicted Functional Partners:
CVI76946.1
HlyD family secretion protein.
 
 0.659
CVI82439.1
Secretion protein HlyD family protein.
 
 0.659
CVI83406.1
Multidrug resistance protein A.
 
 0.648
CVI77700.1
Bcr/CflA subfamily drug resistance transporter.
  
   
 0.646
CVI76394.1
Secretion protein HlyD family protein.
 
 0.644
CVI84301.1
Hypothetical protein.
       0.598
CVI84305.1
TetR family transcriptional regulator.
       0.555
CVI79918.1
Chorismate mutase.
   
 
 0.550
CVI74812.1
Anthranilate synthase component I/chorismate-binding protein.
   
 
  0.535
CVI82435.1
Pyochelin synthetase.
 
 
 0.528
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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