STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI84404.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
CVI84400.1
Cytochrome B561.
       0.662
CVI84402.1
Molybdopterin-binding oxidoreductase.
       0.658
CVI81024.1
Hypothetical protein.
  
     0.602
CVI80061.1
Glycosyl transferases group 1.
  
     0.586
CVI76608.1
PRC-barrel domain-containing protein.
  
     0.579
CVI78970.1
Methyltransferase type 11.
  
     0.538
CVI84463.1
Hypothetical protein.
  
     0.521
CVI85284.1
Glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
  
     0.511
CVI81995.1
Hypothetical protein.
  
     0.485
CVI79381.1
ABC transporter ATP binding protein.
  
     0.469
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.