STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI85117.1Conjugal transfer protein TrbG/VirB9/CagX. (273 aa)    
Predicted Functional Partners:
CVI85118.1
Conjugation TrbI family protein.
 
 0.995
CVI85477.1
Conjugal transfer protein TrbI.
 
 0.981
CVI86040.1
Conjugation TrbI family protein.
 
 0.981
CVI85109.1
Type IV secretion/conjugal transfer ATPase.
 
 
 0.964
CVI85120.1
P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.956
CVI85481.1
Conjugal transfer protein TrbE.
 
 
 0.938
CVI85114.1
TrbL/VirB6 plasmid conjugal transfer protein.
  
 0.911
CVI85116.1
VirB8 protein.
  
  
 0.891
CVI85480.1
Conjugal transfer protein TrbF.
 
  
 0.881
CVI85121.1
Lytic transglycosylase, catalytic.
 
   
 0.859
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.