STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI85301.1Xylose isomerase domain-containing protein. (291 aa)    
Predicted Functional Partners:
CVI79249.1
iolD protein; Belongs to the TPP enzyme family.
 
 
 0.871
CVI85300.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.837
CVI85299.1
Monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
    0.819
CVI85310.1
Carbohydrate kinase.
 
  
 0.795
CVI85298.1
ABC transporter.
       0.778
CVI82281.1
Ribokinase-like domain-containing protein.
  
 
 0.767
CVI79247.1
Carbohydrate kinase.
 
 
 0.760
CVI85297.1
Substrate binding component of ABC transporter.
 
     0.745
CVI74599.1
Ribokinase-like domain-containing protein.
 
 
 0.724
CVI79254.1
iolB protein.
 
  
 0.714
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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