STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI85464.1Conjugal transfer protein. (77 aa)    
Predicted Functional Partners:
CVI85465.1
Antirestriction protein-like protein.
       0.794
CVI85463.1
DNA topoisomerase III.
       0.793
CVI85466.1
Putative conjugation protein TraO.
       0.746
CVI85462.1
Conjugal transfer peptidase TraF.
       0.732
CVI85461.1
Conjugal transfer coupling protein TraG.
       0.711
CVI85460.1
Conjugal transfer relaxase TraI.
       0.701
CVI85459.1
Conjugal transfer relaxosome component TraJ.
       0.648
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.