STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI85484.1Conjugal transfer ATPase TrbB. (320 aa)    
Predicted Functional Partners:
CVI85480.1
Conjugal transfer protein TrbF.
 
  
 0.977
CVI85481.1
Conjugal transfer protein TrbE.
 
  
 0.974
CVI85482.1
Conjugal transfer protein TrbD.
 
  
 0.971
CVI85474.1
Conjugal transfer protein.
 
  
 0.962
CVI85477.1
Conjugal transfer protein TrbI.
 
  
 0.961
CVI80311.1
Type II secretion system protein.
 
  
 0.956
CVI85479.1
Conjugal transfer protein TrbG.
 
  
 0.953
CVI85476.1
Conjugal transfer protein TrbJ.
 
  
 0.943
CVI80313.1
Type II secretion system protein.
 
  
 0.926
CVI85483.1
Conjugal transfer protein TrbC.
    
 0.917
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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