STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CVI85814.1Hypothetical protein. (375 aa)    
Predicted Functional Partners:
CVI83914.1
Amine dehydrogenase; Belongs to the aromatic amine dehydrogenase light chain family.
   
  0.956
CVI79294.1
Di-heme cytochrome c peroxidase.
  
 
 0.908
CVI81633.1
Glutamate synthase.
    
  0.769
CVI75185.1
Cytochrome c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 0.750
CVI82435.1
Pyochelin synthetase.
  
  
 0.738
CVI75579.1
Cytochrome c-555 precursor.
  
 0.714
CVI81493.1
Cytochrome c, class I.
  
 0.714
CVI82939.1
Class I cytochrome c.
  
 0.714
CVI83434.1
Cytochrome c, class I.
  
 0.714
CVI83915.1
Cytochrome c, class I.
  
 0.714
Your Current Organism:
Caballeronia humi
NCBI taxonomy Id: 326474
Other names: Burkholderia humi, Burkholderia humi Vandamme et al. 2013, Burkholderia sp. LMG 22934, Burkholderia sp. LMG 22935, Burkholderia sp. R-23322, Burkholderia sp. R-23323, Burkholderia sp. R-23328, Burkholderia sp. R-23370, C. humi, CCUG 63059, Caballeronia humi (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22934, LMG:22934, Paraburkholderia humi, Paraburkholderia humi (Vandamme et al. 2013) Sawana et al. 2015, strain RA1-5
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