Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CVJ37976.1RDD family protein. (171 aa)    
Predicted Functional Partners:
CVJ37959.1
PF11304 family protein.
 
     0.869
CVJ37942.1
Membrane protein.
 
     0.842
CVJ37923.1
RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
       0.809
CVJ91986.1
RNA-binding S4 domain-containing protein.
  
    0.721
lptE
Lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
 
     0.710
CVJ91388.1
Membrane protein.
  
     0.708
CVJ87898.1
Membrane protein.
 
    0.706
CVJ00060.1
Sensor kinase.
  
     0.695
CVI99998.1
Phasin family protein.
  
     0.689
CVJ67872.1
Hypothetical protein.
  
     0.689
Your Current Organism:
Caballeronia telluris
NCBI taxonomy Id: 326475
Other names: Burkholderia sp. LMG 22936, Burkholderia sp. LMG 27136, Burkholderia telluris, Burkholderia telluris Vandamme et al. 2013, C. telluris, CCUG 63060, Caballeronia telluris (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22936, LMG:22936, Paraburkholderia telluris, strain A57-4, strain R-23326
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