Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CVJ80105.1Peptidase S53 propeptide. (519 aa)    
Predicted Functional Partners:
CVJ77833.1
Hypothetical protein.
  
     0.711
CVJ79335.1
Hypothetical protein.
  
     0.711
CVJ58549.1
PQQ enzyme repeat protein.
  
     0.667
CVJ80089.1
Carboxypeptidase.
 
     0.626
CVJ56090.1
Membrane protein.
  
     0.508
CVJ02191.1
Hypothetical protein.
  
     0.504
CVJ80140.1
Glutathione-dependent formaldehyde-activating protein.
 
     0.476
CVJ72391.1
Hypothetical protein.
  
     0.475
CVK01696.1
MFS transporter.
  
     0.463
CVK03268.1
Hypothetical protein.
  
     0.436
Your Current Organism:
Caballeronia telluris
NCBI taxonomy Id: 326475
Other names: Burkholderia sp. LMG 22936, Burkholderia sp. LMG 27136, Burkholderia telluris, Burkholderia telluris Vandamme et al. 2013, C. telluris, CCUG 63060, Caballeronia telluris (Vandamme et al. 2013) Dobritsa and Samadpour 2016, LMG 22936, LMG:22936, Paraburkholderia telluris, strain A57-4, strain R-23326
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