STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VirB4Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)    
Predicted Functional Partners:
OSI10960.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.987
VirB8
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
OSI10953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.959
VirB9
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.958
OSI10956.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.871
TraG
Type IV secretory system conjugative DNA transfer family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.846
OSI10952.1
Secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.817
OSI10944.1
traS protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.778
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.700
OSI09478.1
Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
Your Current Organism:
Neisseria zoodegmatis
NCBI taxonomy Id: 326523
Other names: ATCC 29859, CDC D5986, DSM 21643, LMG 23012, LMG:23012, N. zoodegmatis, NCTC 12230, Neisseria sp. EF-4b, Neisseria sp. R-24681, Neisseria zoodegmatis Vandamme et al. 2006, strain CL 194/78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.