STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HcrFerredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)    
Predicted Functional Partners:
XylE
Catechol 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.897
OSI09924.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.856
MphP
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.851
tmoA
Phenol 2-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.839
MphL
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
dmpM
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
OSI09920.1
Phenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.825
dmpI
2-hydroxymuconate tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 4-oxalocrotonate tautomerase family.
 
     0.815
MhpD
2-oxo-3-hexenedioate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.810
NifU
Fe-S cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.668
Your Current Organism:
Neisseria zoodegmatis
NCBI taxonomy Id: 326523
Other names: ATCC 29859, CDC D5986, DSM 21643, LMG 23012, LMG:23012, N. zoodegmatis, NCTC 12230, Neisseria sp. EF-4b, Neisseria sp. R-24681, Neisseria zoodegmatis Vandamme et al. 2006, strain CL 194/78
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