STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGM71931.1Microcystin dependent protein. (178 aa)    
Predicted Functional Partners:
EGM71928.1
Acetyltransferase, GNAT family.
 
     0.892
EGM71925.1
Aspartyl/asparaginyl beta-hydroxylase and putative dioxygenase.
 
     0.781
EGM71930.1
Microcystin dependent protein.
 
    
0.775
EGM71929.1
Microcystin dependent protein.
 
    
0.750
EGM71932.1
Hypothetical protein.
 
     0.675
EGM69089.1
Cytoplasmic beta-glucosidase.
   
   0.584
EGM71926.1
Hypothetical protein.
 
     0.567
EGM71927.1
Hypothetical protein.
 
     0.558
EGM69070.1
General secretion pathway protein A; Overlaps another CDS with the same product name.
   
   0.515
EGM68164.1
RTX toxin, putative.
   
   0.515
Your Current Organism:
Shewanella sp. HN41
NCBI taxonomy Id: 327275
Other names: S. sp. HN-41, Shewanella sp. HN-41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.