Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGM68259.1 | EGM68653.1 | SOHN41_03751 | SOHN41_03325 | Glutamine synthetase type I. | NAD(P)H-flavin reductase. | 0.545 |
EGM68259.1 | EGM69042.1 | SOHN41_03751 | SOHN41_02850 | Glutamine synthetase type I. | Glutamate synthase [NADPH] large chain. | 0.978 |
EGM68259.1 | EGM71778.1 | SOHN41_03751 | SOHN41_00197 | Glutamine synthetase type I. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.478 |
EGM68259.1 | carA | SOHN41_03751 | SOHN41_00854 | Glutamine synthetase type I. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.933 |
EGM68259.1 | carB | SOHN41_03751 | SOHN41_00855 | Glutamine synthetase type I. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.932 |
EGM68259.1 | purF | SOHN41_03751 | SOHN41_02569 | Glutamine synthetase type I. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.921 |
EGM68259.1 | purL | SOHN41_03751 | SOHN41_01100 | Glutamine synthetase type I. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.596 |
EGM68653.1 | EGM68259.1 | SOHN41_03325 | SOHN41_03751 | NAD(P)H-flavin reductase. | Glutamine synthetase type I. | 0.545 |
EGM68653.1 | EGM69042.1 | SOHN41_03325 | SOHN41_02850 | NAD(P)H-flavin reductase. | Glutamate synthase [NADPH] large chain. | 0.900 |
EGM68653.1 | EGM69066.1 | SOHN41_03325 | SOHN41_02874 | NAD(P)H-flavin reductase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. | 0.943 |
EGM68653.1 | carA | SOHN41_03325 | SOHN41_00854 | NAD(P)H-flavin reductase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.955 |
EGM68653.1 | carB | SOHN41_03325 | SOHN41_00855 | NAD(P)H-flavin reductase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.963 |
EGM68653.1 | purF | SOHN41_03325 | SOHN41_02569 | NAD(P)H-flavin reductase. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.497 |
EGM68653.1 | purL | SOHN41_03325 | SOHN41_01100 | NAD(P)H-flavin reductase. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.723 |
EGM68653.1 | pyrD | SOHN41_03325 | SOHN41_02192 | NAD(P)H-flavin reductase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.996 |
EGM69042.1 | EGM68259.1 | SOHN41_02850 | SOHN41_03751 | Glutamate synthase [NADPH] large chain. | Glutamine synthetase type I. | 0.978 |
EGM69042.1 | EGM68653.1 | SOHN41_02850 | SOHN41_03325 | Glutamate synthase [NADPH] large chain. | NAD(P)H-flavin reductase. | 0.900 |
EGM69042.1 | EGM71778.1 | SOHN41_02850 | SOHN41_00197 | Glutamate synthase [NADPH] large chain. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.766 |
EGM69042.1 | argG | SOHN41_02850 | SOHN41_00198 | Glutamate synthase [NADPH] large chain. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.912 |
EGM69042.1 | carA | SOHN41_02850 | SOHN41_00854 | Glutamate synthase [NADPH] large chain. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.928 |
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