STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGM70564.1Polysaccharide deacetylase in N-acetylglucoamine utilization. (375 aa)    
Predicted Functional Partners:
EGM71876.1
Polymyxin resistance protein ArnT; Undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB.
 
 
 0.734
EGM68254.1
2,4'-dihydroxyacetophenone dioxygenase.
  
     0.653
EGM67952.1
Hypothetical protein.
  
     0.533
EGM71525.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
    
 0.506
EGM68849.1
Hypothetical protein.
  
     0.496
EGM69521.1
Alkaline serine protease.
 
     0.457
EGM70813.1
Chitinase.
  
  
 0.440
EGM70565.1
Hypothetical protein.
       0.437
EGM69543.1
Quaternary ammonium compound-resistance protein sugE.
  
 
 0.436
EGM69089.1
Cytoplasmic beta-glucosidase.
    
 0.432
Your Current Organism:
Shewanella sp. HN41
NCBI taxonomy Id: 327275
Other names: S. sp. HN-41, Shewanella sp. HN-41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.