Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGM69950.1Hypothetical protein. (90 aa)    
Predicted Functional Partners:
EGM69949.1
Hypothetical protein.
       0.792
EGM68194.1
Acetolactate synthase small subunit.
  
     0.759
seqA
SeqA protein, negative modulator of initiation of replication; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
 
    0.758
EGM69951.1
Flavodoxin 1; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
  
  
 0.746
EGM69649.1
Inosine-guanosine kinase.
  
     0.735
EGM70911.1
Hypothetical lipoprotein YajG precursor.
  
    0.602
EGM69913.1
Hypothetical protein; Belongs to the UPF0352 family.
  
    0.586
EGM69865.1
Protein YcgL.
  
     0.549
EGM69887.1
Protein yifE.
  
     0.542
EGM69947.1
Esterase ybfF; Overlaps another CDS with the same product name.
       0.536
Your Current Organism:
Shewanella sp. HN41
NCBI taxonomy Id: 327275
Other names: S. sp. HN-41, Shewanella sp. HN-41
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