STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadRTranscriptional regulator for fatty acid degradation FadR, GntR family; Multifunctional regulator of fatty acid metabolism. (238 aa)    
Predicted Functional Partners:
EGM71838.1
Unsaturated fatty acid biosynthesis repressor FabR, TetR family.
  
   
 0.787
EGM68683.1
Methionine repressor MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis.
  
   
 0.767
EGM69913.1
Hypothetical protein; Belongs to the UPF0352 family.
  
     0.764
seqA
SeqA protein, negative modulator of initiation of replication; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.720
rraB
Ribonuclease E inhibitor RraB; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
     0.707
EGM70245.1
Hypothetical protein.
  
    0.692
EGM69040.1
Aerobic respiration control sensor protein arcB.
  
     0.680
EGM69037.1
DNA mismatch repair endonuclease MutH.
  
     0.672
EGM69410.1
Protein of unknown function DUF412.
  
     0.667
EGM69036.1
DNA mismatch repair endonuclease MutH.
  
     0.656
Your Current Organism:
Shewanella sp. HN41
NCBI taxonomy Id: 327275
Other names: S. sp. HN-41, Shewanella sp. HN-41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.