STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGM68565.1Hypothetical protein. (617 aa)    
Predicted Functional Partners:
EGM68796.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
 
 0.584
EGM68797.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
 
 0.584
EGM68561.1
Dna binding response regulator PrrA (RegA).
       0.529
EGM68562.1
Sensor histidine kinase PrrB (RegB).
       0.529
EGM68564.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
       0.529
folE
GTP cyclohydrolase I type 1.
    
 0.486
EGM68942.1
Azoreductase.
  
  
  0.468
EGM69935.1
Hypothetical protein.
  
     0.466
EGM71028.1
Hypothetical hypothetical protein.
  
     0.456
EGM69070.1
General secretion pathway protein A; Overlaps another CDS with the same product name.
  
  
 0.425
Your Current Organism:
Shewanella sp. HN41
NCBI taxonomy Id: 327275
Other names: S. sp. HN-41, Shewanella sp. HN-41
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.