AU210_001366 protein (Fusarium oxysporum f. sp. radiciscucumerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AU210_001366

Fibronectin type-III domain-containing protein. (1134 aa)

Predicted Functional Partners:

AU210_014488

0.702

AU210_003924

0.702

AU210_007692

0.661

AU210_010110

0.644

AU210_001710

0.620

AU210_009300

0.612

AU210_009342

0.606

AU210_003208

0.582

AU210_010601

0.576

AU210_004627

0.576

Your Current Organism:

Fusarium oxysporum f. sp. radiciscucumerinum

NCBI taxonomy Id: 327505
Other names: F. oxysporum f. sp. radicis-cucumerinum, Fusarium oxysporum f. sp. radicis-cucumerinum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AU210_001366	AU210_001710	A0A2H3I111	A0A2H3I7X3	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.620
AU210_001366	AU210_003208	A0A2H3I111	A0A2H3HQ73	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.582
AU210_001366	AU210_003924	A0A2H3I111	A0A2H3HKZ0	Fibronectin type-III domain-containing protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.702
AU210_001366	AU210_004627	A0A2H3I111	A0A2H3HXD5	Fibronectin type-III domain-containing protein.	Uncharacterized protein; Belongs to the arginase family.	0.576
AU210_001366	AU210_007692	A0A2H3I111	A0A2H3GYE1	Fibronectin type-III domain-containing protein.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.661
AU210_001366	AU210_009300	A0A2H3I111	A0A2H3GQY7	Fibronectin type-III domain-containing protein.	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	0.612
AU210_001366	AU210_009342	A0A2H3I111	A0A2H3GR17	Fibronectin type-III domain-containing protein.	Semialdhyde_dh domain-containing protein.	0.606
AU210_001366	AU210_010110	A0A2H3I111	A0A2H3GRC8	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.644
AU210_001366	AU210_010601	A0A2H3I111	A0A2H3GZA1	Fibronectin type-III domain-containing protein.	Uncharacterized protein; Belongs to the arginase family.	0.576
AU210_001366	AU210_014488	A0A2H3I111	A0A2H3G3D9	Fibronectin type-III domain-containing protein.	Orn_Arg_deC_N domain-containing protein.	0.702
AU210_001710	AU210_001366	A0A2H3I7X3	A0A2H3I111	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.620
AU210_001710	AU210_003924	A0A2H3I7X3	A0A2H3HKZ0	Uncharacterized protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.849
AU210_001710	AU210_014488	A0A2H3I7X3	A0A2H3G3D9	Uncharacterized protein.	Orn_Arg_deC_N domain-containing protein.	0.849
AU210_003208	AU210_001366	A0A2H3HQ73	A0A2H3I111	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.582
AU210_003924	AU210_001366	A0A2H3HKZ0	A0A2H3I111	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Fibronectin type-III domain-containing protein.	0.702
AU210_003924	AU210_001710	A0A2H3HKZ0	A0A2H3I7X3	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein.	0.849
AU210_003924	AU210_004627	A0A2H3HKZ0	A0A2H3HXD5	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Uncharacterized protein; Belongs to the arginase family.	0.857
AU210_003924	AU210_007692	A0A2H3HKZ0	A0A2H3GYE1	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.897
AU210_003924	AU210_009300	A0A2H3HKZ0	A0A2H3GQY7	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.	0.427
AU210_003924	AU210_009342	A0A2H3HKZ0	A0A2H3GR17	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Semialdhyde_dh domain-containing protein.	0.875