Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BIW53_03360Transposase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (1158 aa)    
Predicted Functional Partners:
OHU96908.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.741
OHU93396.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.720
OHU93398.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.720
OHU97955.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.
    
   0.648
BIW53_09600
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.648
OHU96850.1
Forkhead-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.584
OHU95960.1
DUF2063 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.555
OHU94592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.490
OHU96989.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.489
OHU95959.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0276 family.
   
    0.489
Your Current Organism:
Pseudoalteromonas byunsanensis
NCBI taxonomy Id: 327939
Other names: JCM 12483, KCTC 12274, P. byunsanensis, Pseudoalteromonas byunsanensis Park et al. 2005, strain FR1199
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