Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG12247.1 | OJG12248.1 | RU93_GL000177 | RU93_GL000178 | Hypothetical protein. | Primosomal protein DnaI. | 0.984 |
OJG12247.1 | OJG12249.1 | RU93_GL000177 | RU93_GL000179 | Hypothetical protein. | Hypothetical protein. | 0.916 |
OJG12247.1 | OJG12250.1 | RU93_GL000177 | RU93_GL000180 | Hypothetical protein. | SAM-dependent methyltransferase. | 0.887 |
OJG12247.1 | OJG12251.1 | RU93_GL000177 | RU93_GL000181 | Hypothetical protein. | YbgI/family dinuclear metal center protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.887 |
OJG12247.1 | coaE | RU93_GL000177 | RU93_GL000175 | Hypothetical protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.858 |
OJG12247.1 | mprF | RU93_GL000177 | RU93_GL000183 | Hypothetical protein. | Integral membrane protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.852 |
OJG12247.1 | mutM | RU93_GL000177 | RU93_GL000174 | Hypothetical protein. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.912 |
OJG12247.1 | nrdR | RU93_GL000177 | RU93_GL000176 | Hypothetical protein. | Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.951 |
OJG12247.1 | pepT | RU93_GL000177 | RU93_GL000182 | Hypothetical protein. | Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. | 0.887 |
OJG12247.1 | polA | RU93_GL000177 | RU93_GL000173 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.865 |
OJG12248.1 | OJG12247.1 | RU93_GL000178 | RU93_GL000177 | Primosomal protein DnaI. | Hypothetical protein. | 0.984 |
OJG12248.1 | OJG12249.1 | RU93_GL000178 | RU93_GL000179 | Primosomal protein DnaI. | Hypothetical protein. | 0.916 |
OJG12248.1 | OJG12250.1 | RU93_GL000178 | RU93_GL000180 | Primosomal protein DnaI. | SAM-dependent methyltransferase. | 0.909 |
OJG12248.1 | OJG12251.1 | RU93_GL000178 | RU93_GL000181 | Primosomal protein DnaI. | YbgI/family dinuclear metal center protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.887 |
OJG12248.1 | coaE | RU93_GL000178 | RU93_GL000175 | Primosomal protein DnaI. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.868 |
OJG12248.1 | mprF | RU93_GL000178 | RU93_GL000183 | Primosomal protein DnaI. | Integral membrane protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.742 |
OJG12248.1 | mutM | RU93_GL000178 | RU93_GL000174 | Primosomal protein DnaI. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.897 |
OJG12248.1 | nrdR | RU93_GL000178 | RU93_GL000176 | Primosomal protein DnaI. | Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.919 |
OJG12248.1 | pepT | RU93_GL000178 | RU93_GL000182 | Primosomal protein DnaI. | Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. | 0.887 |
OJG12248.1 | polA | RU93_GL000178 | RU93_GL000173 | Primosomal protein DnaI. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.899 |
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